1 |
<?xml version="1.0" encoding="UTF-8"?>
|
2 |
<!DOCTYPE X3D PUBLIC "ISO//Web3D//DTD X3D 3.1//EN" "https://www.web3d.org/specifications/x3d-3.1.dtd">
|
3 | <X3D profile='Immersive' version='3.1' xmlns:xsd='http://www.w3.org/2001/XMLSchema-instance' xsd:noNamespaceSchemaLocation='https://www.web3d.org/specifications/x3d-3.1.xsd'> |
4 | <head> |
5 | <meta name='title' content='MedicalMetadataViewer.x3d'/> |
6 | <meta name='description' content='Viewer demonstrating sample medical ontology integration with X3D scene graph.'/> |
7 | <meta name='creator' content='Nick Polys and Andrew Ray'/> |
8 | <meta name='created' content='1 November 2007'/> |
9 | <meta name='modified' content='9 October 2023'/> |
10 | <meta name='reference' content='https://www.web3d.org/x3d/workgroups/medical'/> |
11 | <meta name='subject' content='medical metadata'/> |
12 | <meta name=' warning ' content=' incomplete development '/> |
13 | <meta name='identifier' content='https://www.web3d.org/x3d/content/examples/Basic/Medical/MedicalMetadataViewer.x3d'/> |
14 | <meta name='generator' content='FluxStudio'/> |
15 | <meta name='generator' content='(VT application for metadata generation)'/> |
16 | <meta name='generator' content='X3D-Edit 4.0, https://savage.nps.edu/X3D-Edit'/> |
17 | <meta name='license' content='../license.html'/> |
18 | </head> |
19 | <Scene> |
20 | <WorldInfo title='MedicalMetadataViewer.x3d'/> |
21 | <Transform DEF='Body'> |
22 | <Transform DEF='BodyShape'> |
23 |
<!-- ROUTE information for SkinSwitch node:
[from toggler.tog to whichChoice
]
-->
<Switch DEF='SkinSwitch' whichChoice='0'> |
24 | <Inline url=' "BodySkinIndexedFaceSetNIST.x3d" "https://www.web3d.org/x3d/content/examples/Basic/Medical/BodySkinIndexedFaceSetNIST.x3d" "BodySkinIndexedFaceSetNIST.wrl" "https://www.web3d.org/x3d/content/examples/Basic/Medical/BodySkinIndexedFaceSetNIST.wrl" '/> |
25 | <Group/> |
26 | </Switch> |
27 | </Transform> |
28 | <Group DEF='BodyParts'> |
29 | <Group DEF='RespiratorySystem'> |
30 | <MetadataSet DEF='m7334' name='Upper_lobe_of_lung' reference='FMA'> |
31 | <MetadataString containerField='value' name='has inherent 3D shape' value='"true"'/> |
32 | <MetadataSet containerField='value' name='regional part' reference='FMA'> |
33 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
34 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
35 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
36 | </MetadataSet> |
37 | <MetadataString containerField='value' name='regional part of' value='"blank"'/> |
38 | <MetadataSet containerField='value' name='constitutional part' reference='FMA'> |
39 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Parenchyma_of_lobe_of_lung"'/> |
40 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Lobar_bronchial_tree"'/> |
41 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Pleura_of_lobe_of_lung"'/> |
42 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Neural_network_of_lobe_of_lung"'/> |
43 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Vasculature_of_lobe_of_lung"'/> |
44 | </MetadataSet> |
45 | <MetadataString containerField='value' name='dimension' value='"3-dimension"'/> |
46 | <MetadataString containerField='value' name='has dimension' value='"true"'/> |
47 | <MetadataString containerField='value' name='has boundary' value='"true"'/> |
48 | <MetadataInteger containerField='value' name='FMAID' value='7334'/> |
49 | <MetadataString containerField='value' name='Preferred name' value='"Upper_lobe_of_lung"'/> |
50 | <MetadataSet containerField='value' name='Synonym' reference='FMA'> |
51 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Lobus_superior"'/> |
52 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Superior_lobe_of_lung"'/> |
53 | </MetadataSet> |
54 | <MetadataSet containerField='value' name='part' reference='FMA'> |
55 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Parenchyma_of_lobe_of_lung"'/> |
56 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Lobar_bronchial_tree"'/> |
57 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Pleura_of_lobe_of_lung"'/> |
58 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
59 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
60 | <MetadataString containerField='value' name='SetName' reference='FMA' value='"Bronchopulmonary_segment"'/> |
61 | </MetadataSet> |
62 | <MetadataString containerField='value' name='part of' value='"Lobular_organ"'/> |
63 | <MetadataString containerField='value' name='Non-English equivalent' value='"Lobus_superior_pulmonis"'/> |
64 | <MetadataString containerField='value' name='constitutional part of' value='"blank"'/> |
65 | </MetadataSet> |
66 | <Transform DEF='RespiratoryShape' rotation='-.995 .102 0 3.142' scale='3.96357 4.0229 6.98914' translation='-9.65146 62.0249 -3.89403'> |
67 | <Shape DEF='airway'> |
68 | <Appearance> |
69 | |
70 | </Appearance> |
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17.58079 -1.76066 -10.88741 17.04604 -1.81354 -10.47785 16.68642 -1.76701 -10.18894 16.41344 -1.59661 -9.94749 16.18401 -1.44484 -9.71685 15.94849 -1.18319 -9.56012 15.77675 -.92199 -9.49591 15.67587 -.59723 -9.49334 15.60352 -.09694 -9.57119 15.62292 .24342 -9.67583 15.6729 .53048 -9.7907 13.73414 .30748 -10.00223 13.76917 .71762 -10.31044 13.822 1.15234 -10.7356 13.89958 1.32523 -11.28561 14.00101 1.45068 -11.84721 14.10745 1.3181 -12.54235 14.23969 1.10969 -12.96434 14.32052 .93262 -13.23038 14.37562 .44413 -13.37551 14.40642 .11028 -13.40473 14.41623 -.28544 -13.2854 14.39756 -.61635 -13.19003 14.38446 -1.04555 -12.89894 14.33456 -1.45612 -12.61787 14.28403 -1.63917 -11.82499 14.1375 -1.79217 -11.29184 14.03806 -1.81254 -10.88723 13.9611 -1.69224 -10.54717 13.89633 -1.58253 -10.19815 13.82868 -1.36351 -9.9437 13.77858 -1.13304 -9.79435 13.74728 -.82546 -9.68742 13.72191 -.33611 -9.7164 13.72353 .00962 -9.7907 13.73414 .30748 -9.76922 12.99402 .29504 -9.96073 12.90275 .70636 -10.23806 12.7639 1.14291 -10.6162 12.55698 1.31859 -11.10436 12.28575 1.44771 -11.6001 11.99942 1.31906 -12.21327 11.6434 1.11553 -12.58496 11.42545 .94146 -12.81538 11.27447 .4551 -12.94038 11.18968 .12245 -12.96215 11.16076 -.27282 -12.85308 11.20866 -.60432 -12.7642 11.24101 -1.0339 -12.50227 11.37214 -1.44619 -12.25158 11.50646 -1.63104 -11.54814 11.89846 -1.78936 -11.07599 12.16502 -1.81336 -10.71909 12.3722 -1.6959 -10.41921 12.54664 -1.58858 -10.11254 12.72952 -1.37209 -9.8897 12.86539 -1.1435 -9.76069 12.95136 -.83714 -9.67112 13.0226 -.34883 -9.70037 13.02053 -.00313 -9.76922 12.99402 .29504 -9.98414 11.83334 .47124 -10.1625 11.69133 .78111 -10.39943 11.48937 1.09927 -10.66612 11.22369 1.18874 -10.99728 10.88296 1.22408 -11.29869 10.54295 1.04674 -11.66554 10.12343 .79097 -11.88111 9.87029 .59431 -11.9639 9.72212 .16179 -11.99958 9.64332 -.12932 -11.96048 9.6374 -.45688 -11.84583 9.72053 -.71317 -11.731 9.79194 -1.05288 -11.50723 9.98269 -1.35337 -11.32124 10.16041 -1.4688 -10.84776 10.65075 -1.49695 -10.54101 10.97796 -1.44832 -10.32735 11.22217 -1.30027 -10.14899 11.42717 -1.16879 -9.98092 11.63434 -.94673 -9.86836 11.78323 -.72687 -9.82658 11.8654 -.45676 -9.83459 11.91609 -.04302 -9.89983 11.88786 .23648 -9.98414 11.83334 .47124 -9.14178 11.30716 .51169 -9.33327 11.17218 .75221 -9.56864 10.97823 .99289 -9.77899 10.71778 1.03721 -10.0248 10.38248 1.02833 -10.20595 10.04444 .84356 -10.41832 9.62676 .58499 -10.53368 9.37405 .39394 -10.50546 9.22099 .01947 -10.47201 9.13861 -.23023 -10.37727 9.12748 -.50193 -10.24258 9.20528 -.70472 -10.0908 9.27019 -.97783 -9.86851 9.45337 -1.20513 -9.71103 9.6267 -1.28077 -9.36413 10.1096 -1.24921 -9.15298 10.43294 -1.17238 -9.02911 10.67607 -1.02255 -8.9273 10.88027 -.89083 -8.85132 11.08808 -.6839 -8.81489 11.23841 -.48532 -8.83967 11.32377 -.25262 -8.92951 11.38042 .09541 -9.03332 11.35712 .32353 -9.14178 11.30716 .51169 -7.37229 10.27605 .17507 -7.4086 10.14918 .41688 -7.44634 9.96385 .67346 -7.45868 9.70693 .77647 -7.4655 9.37428 .85198 -7.44821 9.03385 .77582 -7.42268 8.61234 .6555 -7.40247 8.35632 .55274 -7.35466 8.1938 .26638 -7.32231 8.10495 .07055 -7.28522 8.08609 -.16202 -7.25547 8.15737 -.35695 -7.21636 8.21385 -.60961 -7.18072 8.38889 -.85193 -7.16616 8.55853 -.96045 -7.15892 9.03816 -1.05293 -7.16172 9.36091 -1.06661 -7.17649 9.60624 -.99717 -7.1897 9.81247 -.93375 -7.21317 10.02444 -.80609 -7.23686 10.17918 -.67139 -7.26681 10.27051 -.49102 -7.3133 10.33669 -.20365 -7.34522 10.32016 -.00029 -7.37229 10.27605 .17507 -6.97333 10.52484 .17789 -6.91363 10.44537 .33364 -6.82552 10.3379 .49608 -6.70102 10.21143 .55121 -6.53929 10.05284 .58363 -6.37234 9.90422 .51355 -6.16539 9.72252 .40925 -6.03941 9.6148 .32593 -5.95738 9.56613 .12419 -5.91217 9.54302 -.01253 -5.90079 9.55513 -.17011 -5.93378 9.60504 -.29737 -5.959 9.65334 -.46431 -6.04222 9.75484 -.61773 -6.12404 9.84196 -.68139 -6.35739 10.06915 -.71711 -6.51487 10.21771 -.70847 -6.63531 10.32352 -.64816 -6.73661 10.41201 -.59407 -6.84131 10.4974 -.49642 -6.91813 10.55604 -.39721 -6.96441 10.58166 -.27075 -6.99941 10.58627 -.07367 -6.99323 10.5606 .0623 -6.97333 10.52484 .17789 -5.60268 11.57347 .0056 -5.65619 11.51597 .1554 -5.71258 11.42415 .31876 -5.73383 11.27636 .40028 -5.74831 11.08032 .47265 -5.72857 10.86725 .45869 -5.69826 10.60132 .42647 -5.67316 10.43739 .38988 -5.60742 10.31539 .2398 -5.56263 10.24551 .13523 -5.5101 10.21518 .00346 -5.46673 10.24269 -.11458 -5.41025 10.25652 -.26445 -5.35699 10.34325 -.41873 -5.33383 10.43755 -.4958 -5.31665 10.72153 -.59073 -5.31602 10.91658 -.62676 -5.33353 11.07131 -.60835 -5.34938 11.20178 -.58998 -5.37975 11.34096 -.53525 -5.41127 11.44593 -.4715 -5.45259 11.51607 -.37601 -5.51783 11.5796 -.21694 -5.56352 11.58605 -.09884 -5.60268 11.57347 .0056'/> |
175 | </IndexedFaceSet> |
176 | </Shape> |
177 |
<!-- ROUTE information for colonTS node:
[from isOver to viewMetadata.colonTS
]
-->
<TouchSensor DEF='colonTS' description='Show Info'/> |
178 | </Transform> |
179 | </Group> |
180 | </Group> |
181 | </Group> |
182 | </Transform> |
183 | <Viewpoint position='0 40 145'/> |
184 |
<!-- ROUTE information for HUD node:
[from PS.position_changed to set_translation
]
[from PS.orientation_changed to set_rotation
]
-->
<Transform DEF='HUD'> |
185 | <Transform DEF='dad_HUDoffset' scale='.05 .05 .05' translation='-.3 -0.35 -1'> |
186 | <Transform DEF='dad_Text1' translation='-4.57411 .7 .39084'> |
187 | <Shape DEF='Text1'> |
188 | <Appearance> |
189 | <Material USE='White'/> |
190 | </Appearance> |
191 | <Text DEF='GeoText1' maxExtent='0.000' string=' "Show / Hide Skin" '> |
192 | <FontStyle family='"SANS"' justify='"BEGIN" "BEGIN"' spacing='1.000' style='ITALIC'/> |
193 | </Text> |
194 | </Shape> |
195 | </Transform> |
196 | <Transform DEF='dad_Group1' translation='-.06693 0 .0019'> |
197 | <Group DEF='Group1'> |
198 | <Transform DEF='dad_Sphere1' translation='-5.97145 0 .1144'> |
199 | <Shape DEF='Sphere1'> |
200 | <Appearance> |
201 | <Material USE='Red'/> |
202 | </Appearance> |
203 | <Sphere DEF='GeoSphere1' radius='.75'/> |
204 | </Shape> |
205 | </Transform> |
206 |
<!-- ROUTE information for bodyTS node:
[from touchTime to toggler.hit
]
-->
<TouchSensor DEF='bodyTS' description='toggle body geometry'/> |
207 | </Group> |
208 | </Transform> |
209 | <DirectionalLight DEF='Light1' ambientIntensity='0.000' direction='.11526 -.6393 -.76027' intensity='1.000'/> |
210 | <Transform translation='-8 15 0'> |
211 | <Shape DEF='Text2'> |
212 | <Appearance> |
213 | <Material USE='White'/> |
214 | </Appearance> |
215 |
<!-- ROUTE information for msg node:
[from viewMetadata.msg to string
]
-->
<Text DEF='msg' maxExtent='0.000' string='"Metadata Info", "line2"'> |
216 | <FontStyle justify='"BEGIN" "BEGIN"' size='.7500'/> |
217 | </Text> |
218 | </Shape> |
219 | </Transform> |
220 | </Transform> |
221 | </Transform> |
222 |
<!-- ROUTE information for PS node:
[from position_changed to HUD.set_translation
]
[from orientation_changed to HUD.set_rotation
]
-->
<ProximitySensor DEF='PS' size='1000 1000 1000'/> |
223 | < ROUTE fromNode='PS' fromField='position_changed' toNode='HUD' toField='set_translation'/> |
224 | < ROUTE fromNode='PS' fromField='orientation_changed' toNode='HUD' toField='set_rotation'/> |
225 |
<!-- ROUTE information for toggler node:
[from bodyTS.touchTime to hit
]
[from tog to SkinSwitch.whichChoice
]
-->
<Script DEF='toggler'> |
226 | <field name='hit' type='SFTime' accessType='inputOnly'/> |
227 | <field name='tog' type='SFInt32' accessType='outputOnly'/> |
<![CDATA[
ecmascript: var bit; function initialize() { bit = 1; } function hit (val) { if (bit == 1) { tog = 0; bit = 0; } else { tog = 1; bit = 1; } }
]]>
|
|
229 | </Script> |
230 | < ROUTE fromNode='bodyTS' fromField='touchTime' toNode='toggler' toField='hit'/> |
231 | < ROUTE fromNode='toggler' fromField='tog' toNode='SkinSwitch' toField='whichChoice'/> |
232 |
<!-- ROUTE information for viewMetadata node:
[from lungTS.isOver to lungTS
]
[from liverTS.isOver to liverTS
]
[from colonTS.isOver to colonTS
]
[from msg to msg.string
]
-->
<Script DEF='viewMetadata'> |
233 | <field name='lungTS' type='SFBool' accessType='inputOnly'/> |
234 | <field name='colonTS' type='SFBool' accessType='inputOnly'/> |
235 | <field name='liverTS' type='SFBool' accessType='inputOnly'/> |
236 | <field name='who' type='SFInt32' accessType='inputOutput'/> |
237 | <field name='lungMeta' type='SFNode' accessType='initializeOnly'> |
238 | <!-- initialization node (if any) goes here --> |
239 | </field> |
240 | <field name='colonMeta' type='SFNode' accessType='initializeOnly'> |
241 | <!-- initialization node (if any) goes here --> |
242 | </field> |
243 | <field name='liverMeta' type='SFNode' accessType='initializeOnly'> |
244 | <!-- initialization node (if any) goes here --> |
245 | </field> |
246 | <field name='msg' type='MFString' accessType='outputOnly'/> |
<![CDATA[
ecmascript: function initialize() { msg = new MFString(); msg[0] = 'Metadata Here'; msg[1] = 'Metadata Here'; } function lungTS(val) { //msg = buildString(lungMeta); //msg[0] = lungMeta.reference; // works in .x3dv not .x3d??? msg[0] = 'FMA parser'; msg[1] = 'Preferred name: Upper_lobe_of_lung'; msg[2] = 'Synonym: Lobus_superior '; msg[3] = 'Synonym: Superior_lobe_of_lung'; } function liverTS(val) { //msg = buildString(liverMeta); //msg[0] = liverMeta.reference; msg[0] = 'FMA mysql'; msg[1] = 'short_value: Liver'; msg[2] = 'frame: 26212'; msg[3] = 'frame_type: 6 '; } function colonTS(val) { //msg = buildString(colonMeta); // msg[0] = colonMeta.reference; msg[0] ='SNOMED'; msg[1] = 'conceptId: 369445005 '; msg[2] = 'descriptionId: 774149015 '; msg[3] = 'fullySpecfiedName: Chronic proctocolitis (disorder)'; } function buildString(aNode) { // walking for metadata works differently across browsers encodings!!! str = new MFString(); str [0] = aNode.reference; // the top DEF'd MetaDataSet tmp = new MFNode(); tmp = aNode.children; Browser.println (tmp.length); for (i = 0; tmp.length ; i++) { // this = aNode.children[i]; // // if () // drill down one more level of children return str; } }
]]>
|
|
248 | </Script> |
249 | < ROUTE fromNode='lungTS' fromField='isOver' toNode='viewMetadata' toField='lungTS'/> |
250 | < ROUTE fromNode='liverTS' fromField='isOver' toNode='viewMetadata' toField='liverTS'/> |
251 | < ROUTE fromNode='colonTS' fromField='isOver' toNode='viewMetadata' toField='colonTS'/> |
252 | < ROUTE fromNode='viewMetadata' fromField='msg' toNode='msg' toField='string'/> |
253 | </Scene> |
254 | </X3D> |
Event Graph ROUTE Table entries with 8 ROUTE connections total, showing X3D event-model relationships for this scene.
Each row shows an event cascade that may occur during a single timestamp interval between frame renderings, as part of the X3D execution model.
bodyTS
TouchSensor touchTime SFTime |
toggler
Script hit SFTime |
then
|
toggler
Script tog SFInt32 |
SkinSwitch
Switch whichChoice SFInt32 |
colonTS
TouchSensor isOver SFBool |
viewMetadata
Script colonTS SFBool |
then
|
viewMetadata
Script msg MFString |
msg
Text string MFString |
liverTS
TouchSensor isOver SFBool |
viewMetadata
Script liverTS SFBool |
then
|
viewMetadata
Script msg MFString |
msg
Text string MFString |
lungTS
TouchSensor isOver SFBool |
viewMetadata
Script lungTS SFBool |
then
|
viewMetadata
Script msg MFString |
msg
Text string MFString |
toggler
Script tog SFInt32 |
SkinSwitch
Switch whichChoice SFInt32 |
viewMetadata
Script msg MFString |
msg
Text string MFString |
PS
ProximitySensor position_changed SFVec3f |
HUD
Transform set_translation SFVec3f |
|
PS
ProximitySensor orientation_changed SFRotation |
HUD
Transform set_rotation SFRotation |
<!--
Color legend: X3D terminology
<X3dNode
DEF='idName' field='value'/>
matches XML terminology
<XmlElement
DEF='idName' attribute='value'/>
(Light-blue background: event-based behavior node or statement)
(Grey background inside box: inserted documentation)
(Magenta background: X3D Extensibility)
-->
<!-- For additional help information about X3D scenes, please see X3D Tooltips, X3D Resources, and X3D Scene Authoring Hints. -->